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Acta Biochimica et Biophysica Sinica 2009 41(3):179-187; doi:10.1093/abbs/gmn021
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© The Author 2009. Published by ABBS Editorial Office in association with Oxford University Press on behalf of the Institute of Biochemistry and Cell Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences.

Pathogenic mutations of nuclear genes associated with mitochondrial disorders

Xiaoyu Zhu1, Xuerui Peng1, Min-Xin Guan2 and Qingfeng Yan1,*

1 College of Life Science, Zhejiang University, Hangzhou 310058, People's Republic of China
2 Division and Program in Human Genetics, Cincinnati Children's Hospital Medical Center, Cincinnati, OH 45229, USA

* Correspondence address: Tel/Fax: +86-571-88206646; E-mail: qfyan{at}zju.edu.cn


    Abstract
 Top
 Abstract
 Introduction
 Pathogenic Mutations of Nuclear...
 Pathogenic Mutations of Nuclear...
 Pathogenic Mutations of Nuclear...
 Nuclear Modifier Genes Modulate...
 Concluding Remarks
 Funding
 References
 
Mitochondrial disorders are clinical phenotypes associated with mitochondrial dysfunction, which can be caused by mutations in mitochondrial DNA (mtDNA) or nuclear genes. In this review, we summarized the pathogenic mutations of nuclear genes associated with mitochondrial disorders. These nuclear genes encode, components of mitochondrial translational machinery and structural subunits and assembly factors of the oxidative phosphorylation, that complex. The molecular mechanisms, that nuclear modifier genes modulate the phenotypic expression of mtDNA mutations, are discussed in detail.

Keywords    mitochondria; mitochondrial disorder; nuclear modifier gene; pathogenic mutation

Received: October 7, 2008; Accepted: November 25, 2008
    Introduction
 Top
 Abstract
 Introduction
 Pathogenic Mutations of Nuclear...
 Pathogenic Mutations of Nuclear...
 Pathogenic Mutations of Nuclear...
 Nuclear Modifier Genes Modulate...
 Concluding Remarks
 Funding
 References
 
Mitochondrial disorders are clinical phenotypes associated with mitochondrial dysfunction, in particular, abnormalities of oxidative phosphorylation (OXPHOS), which can be caused by mutations in mitochondrial DNA (mtDNA) or nuclear genes. When combining the results of the epidemiology data on childhood and adult mitochondrial diseases, the minimum prevalence is at least 1 in 5000 and could be much higher [1].

The concept of mitochondrial disorders was introduced in 1962, when Luft et al. [2] described a young Swedish woman with severe hypermetabolism of non-thyroid origin with a defect in the maintenance of mitochondrial respiratory control. The molecular era of mitochondrial diseases began in 1988, with the description of the first pathogenic mutations in mtDNA, large-scale single deletions in patients with ‘mitochondrial myopathies’ [3] and G11778A point mutation in the gene encoding subunit 4 of complex I in multiple families with Leber's hereditary optic neuropathy [4]. Up to August 2008, more than 320 point mutations and hundreds of rearrangements of mtDNA were reported (http://www.mitomap.org), indicating that mtDNA may contribute to the pathogenesis of a number of common disorders such as neuromuscular disorders, neurodegenerative diseases, cardiomyopathy, diabetes, and various cancers. In contrast, the identification of nuclear genes responsible for mitochondrial disorders has proceeded at a much slower pace. In 1995, Bourgeron et al. [5] identified a homozygous mutation in the succinate dehydrogenase A (SDHA) gene. They claimed that this was the first report of a nuclear gene mutation causing a mitochondrial respiratory chain deficiency in humans. Recently, much attention has been paid to investigate the nuclear gene defects that were associated with mitochondrial syndromes.

The studies on mitochondrial disorders in China have been carrying out for a period of time. Yang Fuyu et al. reported that a local Keshan disease is one kind of mitochondrial cardiomyopathy, which is associated with malnutrition, particularly lack of selenium. Since 2005, Chinese MiT/International mitochondrial conferences have been organized three times by Institute of Zoology of the Chinese Academy of Science, Wenzhou Medical College, and Tianjin University of Sport. Their topics are ‘Mitochondria determine cell life and death’, ‘Mitochondria and health’, and ‘From bioenergetics to cell biology and medicine’, respectively. The program of mitochondria and diseases got an independent discipline number (C060503) in the Guide of National Science Foundation of China in 2008 [6].

In this review, we summarized the pathogenic expression of nuclear gene mutations in mitochondrial disorders. These nuclear genes encode some mitochondrial-imported proteins, including components of OXPHOS complexes and factors associated with replication, transcription, assembly, function, and turnover. How to modulate the phenotypic expression of mtDNA mutations by nuclear modifier genes in molecular level is also discussed in detail.


    Pathogenic Mutations of Nuclear Genes Encoding OXPHOS Complex Structural Subunits
 Top
 Abstract
 Introduction
 Pathogenic Mutations of Nuclear...
 Pathogenic Mutations of Nuclear...
 Pathogenic Mutations of Nuclear...
 Nuclear Modifier Genes Modulate...
 Concluding Remarks
 Funding
 References
 
Mitochondrial proteome is estimated to consist of approximately 1500 gene products. Mitochondrial genome encodes only 13 essential polypeptides of OXPHOS, whereas all other structural subunits and assembly factors are nuclear-encoded and imported into mitochondria. The OXPHOS system is composed of five complexes, four of which, complexes I–IV, cooperate to generate a proton gradient across the mitochondrial inner membrane. Complex V generates the universal energy ATP coupling with proton flow [7]. In the past few years, a number of pathogenic mutations in OXPHOS-related nuclear genes have been identified. Mutations of nuclear-encoded structural subunits were summarized in Table 1.


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Table 1 Pathogenic mutations of nuclear genes encoding OXPHOS complex structural subunits

 
Complex I (NADH-ubiquinone reductase) catalyzes the first step in the mitochondrial respiratory chain, in which transfer of electrons from NADH to ubiquinone (co-enzyme Q) is accompanied by the translocation of protons across the inner mitochondrial membrane. Complex I is composed of at least 46 subunits, in which seven are encoded by mtDNA and the others by nuclear DNA, whose deficiency is the most common cause of the mitochondrial disease. Nuclear-encoded subunits are termed NADH dehydrogenase ubiquinone (NDU), followed by a description of function/location (FS-iron-sulfur protein region, FV-flavoprotein region, FA-subcomplex {alpha}, FB-subcomplex β, FC-undefined subcomplex). Complex I deficiency causes a wide range of clinical disorders, ranging from neurological disorders, such as Leigh's syndrome (LS), to cardiomyopathy, liver failure, or myopathy [8,9]. Pathogenic mutations have now been described in 12 of the nuclear-encoded structural subunits (NDUFS1, NDUFS2, NDUFS3, NDUFS4, NDUFS6, NDUFS7, NDUFS8, NDUFV1, NDUFV2, NDUFA1, NDUFA2, and NDUFA11) [10–21] of complex I. Mutations of seven of these nuclear genes (NDUFS1, NDUFS3, NDUFS4, NDUFS7, NDUFS8, NDUFV1, and NDUFA2) [10,12,13,15,16,20] result in Leigh or Leigh-like syndromes, whereas mutations of the NDUFS2 [11], NDUFS6 [14], NDUFV2 [18], NDUFA1 [19], and NDUFA11 [21] genes are associated with hypertrophic cardiomyopathy and encephalomyopathy. NDUFS4 and NDUFS6 are both located in the iron–sulfur fraction of complex I, whose mutations can either prevent complete assembly or destabilize the peripheral arm; the other seven nuclear-encoded subunits (NDUFS1, NDUFS2, NDUFS3, NDUFS7, NDUFS8, NDUFV1, and NDUFV2) [1518] are constitutive of the core of complex I, considered to be essential for the catalysis of electron transfer from NADH to ubiquinone, and for the generation of the proton motive force. Recently, Fernandez-Moreira et al. [19] identified a hemizygous mutation in the X-linked gene NDUFA1, resulting in the assembly/stability abnormalities in the mitochondrial respiratory complexes. Hoefs et al. [20] identified a homozygous G-to-A transition in intron 2 of the NDUFA2 gene, resulting in the skipping of exon 2 and generation of a prematurely truncated protein. Further studies showed that the NDUFA2 mutation resulted in the disturbed assembly and stability of complex I and decreased complex I activity. A splice-site mutation in the NDUFA11 gene is predicted to abolish the first transmembrane domain of the gene product, thereby destabilizing the enzymatic complex [21].

Complex II (succinate-cytochrome c reductase) is an FAD-dependent enzyme at a cross-point between OXPHOS and Krebs-cycle pathways. It comprised four protein subunits encoded by nuclear genes (SDHA, B, C, and D). The homozygous SDHA (flavoprotein subunit) mutations are associated with LS [5], whereas heterozygous mutations in SDHB [22] (iron–sulfur subunit) and in both SDHC [23] and SDHD [24] (integral membrane-protein subunits) are associated with paraganglioma.

Complex III (ubiquinol cytochrome c reductase) catalyzes electron transfer from succinate and nicotinamide adenine dinucleotide-linked dehydrogenases to cytochrome c. It is made up of 11 subunits, of which all but one (cytochrome b) are encoded by nuclear DNA. Haut et al. [25] reported a deletion in UQCRB, encoding the human ubiquinone-cytochrome c reductase binding protein of complex III (QP-C subunit), in a consanguineous family with hypoglycemia and lactic acidosis. Barel et al. [26] identified a single missense (Ser45Phe) mutation in UQCRQ, encoding a ubiquinone-binding protein of low molecular mass, from a large consanguineous Israeli Bedouin kindred with an autosomal-recessive syndrome comprising severe psychomotor retardation and extrapyramidal signs.

Complex IV (cytochrome c oxidase, COX) is the terminal complex of the electron transport chain, which transfers electrons from cytochrome c to molecular oxygen and contributes to the proton motive force used in the generation of ATP. Complex IV is composed of 13 subunits, in which the three largest ones are encoded by mtDNA, whereas the remaining subunits are encoded by nuclear genes. The mtDNA-encoded subunits function during electron transfer, and the nuclear-encoded subunits may be involved in the regulation and assembly of the complex. Massa et al. [27] first reported a disease-associated nuclear gene mutation in COX6B1, which encodes cytochrome c oxidase subunit Vib polypeptide 1 (ubiquitous), resulting in severe infantile encephalomyopathy.

Complex V (ATP synthase or ATPase) couples proton flow from the inter-membrane space back to the matrix by the conversion of ADP and inorganic phosphate to ATP. ATP synthase comprises an integral membrane component F0 and a peripheral moiety F1. It comprised at least 14 nuclear-encoded subunits and two mtDNA-encoded subunits. Up to now, mutations of nuclear-encoded structural subunits were sought for, but never been found in complex V-defective patients.


    Pathogenic Mutations of Nuclear Genes Encoding OXPHOS Complex Assembly Factors
 Top
 Abstract
 Introduction
 Pathogenic Mutations of Nuclear...
 Pathogenic Mutations of Nuclear...
 Pathogenic Mutations of Nuclear...
 Nuclear Modifier Genes Modulate...
 Concluding Remarks
 Funding
 References
 
Although many mutations in nuclear-encoded structural subunits have been identified, they account for only a minority of the OXPHOS complex deficiency cases. The fact suggests that the molecular cause of the disease should be found in other factors involved in the catalytic regulation, assembly, or maintenance of the complex. Only in recent years, a number of assembly factors have been validated, as summarized in Table 2.


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Table 2 Pathogenic mutations of nuclear genes encoding OXPHOS complex assembly factors

 
The role of such factors in complex I biogenesis includes involvement in subunit maturation (e.g. folding/co-factor attachment), chaperoning intermediate assemblies, subunit synthesis, and turnover. B17.2 L (NDUFAF2) encodes complex I assembly factor 2, which was shown to associate with complex I subunits ND1, NDUFS1, NDUFS2, NDUFS7, and NDUFS4 in normal mitochondria. It has been attributed to play a direct role in complex I assembly. Ogilvie et al. [28] identified a homozygous C182T mutation of B17.2L, resulting in a premature stop codon, in a patient with progressive encephalopathy. CIA30 (NDUFAF1) encodes complex I assembly factor 1. Low levels of CIA30 in patient mitochondria correlated with decreased levels of assembled complex I and also decreased enzymatic activity. A CIA30 mutation was identified in a patient with cardioencephalomyopathy [29]. A missense mutation in a conserved residue of C6orf66 (chromosome 6 open reading frame 66) was identified from a consanguineous family with infantile encephalomyopathy, which resulted in a decrease of the protein in muscle and severely reduced levels of complex I activity [30]. A homozygous missense mutation in C20orf7 (chromosome 20 open reading frame 7) was identified from an Egyptian family with lethal neonatal mitochondrial disease. C20orf7 patient fibroblasts showed an almost complete absence of complex I holoenzyme and were defective at an early stage of complex I assembly, but in a manner distinct from the assembly defects caused by mutations in the assembly factor NDUFAF1 [31].

BCS1L encodes a bcs1-like protein as an assembly factor of complex III. de Lonlay et al. [32] reported that mutations in BCS1L are associated with tubulopathy, encephalopathy, and liver failure. Pathogenic expression of the BCS1L mutation also displays another different phenotype, GRACILE (growth retardation, aminoaciduria, cholestasis, iron overload, lactacidosis, and early death) syndrome, which is a recessively inherited lethal disease characterized by fetal growth retardation, lactic acidosis, aminoaciduria, cholestasis, and abnormalities in iron metabolism [33].

Nuclear-gene defects of complex IV are caused by mutations in assembly factors of the enzyme, including SURF1 [34,35], SCO1 [36], SCO2 [37], COX10 [38], COX15 [39,40], and LRPPRC [41]. Patients with COX deficiencies can present with a number of different clinical phenotypes, including LS, French Canadian LS, cardiomyopathy, neonatal hepatic failure, tubulopathy and encephalopathy, and early onset hypertrophic, encephalopathy, lactic acidosis.

No mutation in any of the nuclear-encoded subunits of complex V has been described. Only a homozygous mutation of ATP12, encoding the ATPase assembly factor, was reported by De Meirleir et al. [7] in 2004. Probably, the Atp12p activity is severely compromised when a neutral polar amino acid (tryptophan) is changed into a basic one (arginine) and is no longer able to mediate proper F1 assembly.


    Pathogenic Mutations of Nuclear Genes Encoding Mitochondrial Translational Machinery
 Top
 Abstract
 Introduction
 Pathogenic Mutations of Nuclear...
 Pathogenic Mutations of Nuclear...
 Pathogenic Mutations of Nuclear...
 Nuclear Modifier Genes Modulate...
 Concluding Remarks
 Funding
 References
 
Mitochondria contain a separate translational machinery to produce the mtDNA-encoded polypeptides using mtDNA-encoded tRNA. rRNA encoded by the mtDNA is combined with nuclear-coded proteins to generate mitochondrial ribosomes (mitoribosomes), which is composed of two subunits: the small subunit (SSU) consists of the 12S rRNA and 29 proteins and the large subunit consists of the 16S rRNA and 48 proteins. Synthesis of mitochondrial proteins requires a number of initiation, elongation, and termination (or release) factors and enzymes for mitochondrial rRNA and tRNA maturation (RNA processing and base-modification), all of which are encoded by nuclear genes [42].

Initial factor IF2 promotes the binding of formyl methionyl-transfer RNA (fMet-tRNA) to the small ribosomal subunit in the presence of guanosine triphosphate (GTP) and a template, whereas IF3 promotes the dissociation of the two ribosomal subunits, which produces free SSUs for the initiation of translation. The mammalian elongation factor Tu participates in the formation of the ternary complex that includes EFTu, GTP, and aminoacyl-tRNA, which delivers the aminoacyl-tRNA to the acceptor site of the ribosome. The energy required for this process is supplied by the hydrolysis of GTP, which is followed by the release of EFTu from the ribosome as an EFTu-guanosine diphosphate (GDP) complex. The exchange of GDP for GTP, which regenerates EFTu-GTP, is accomplished by EFTs. EFG catalyzes the translocation of peptidyl-tRNA from the ribosomal-acceptor site to the peptidyl site after peptide-bond formation. Concomitant movement of mRNA exposes the next codon in the acceptor site. Release factor RF1 recognizes stop codons and promotes the releases of the completed protein chain [43].

Several mutations in nuclear genes influencing mitochondrial translational machinery have been identified, as summarized in Table 3.


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Table 3 Pathogenic mutations of nuclear genes influencing mitochondrial translational machinery

 
MRPS16 encodes a protein of the mitoribosomal SSU. The MRPS16 protein is located in a narrow crevice on the SSU and has many contacts with the rRNA, being surrounded by about five rRNA double helices. The binding of the Thermus thermophilus ribosomal protein S16 is an important step in the assembly of the SSU of this organism. A homozygous mutation C331T of MRPS16, predicting a premature stop codon Arg111Ter, was identified in one infant with severe lactic acidosis, developmental defects in the brain, and facial dysmorphisms [44]. MRPS22 encodes a mitochondrial ribosomal protein S22. A mutation in the MRPS22 gene was identified, leading to a reduction of 12S rRNA in fibroblasts, from patients with fatal neonatal hypertrophic cardiomyopathy and kidney tubulopathy [45].

PUS1 (pseudouridine synthase 1) converts uridine into pseudouridine in several positions of tRNAs synthesized in both nuclear and mitochondrial compartments. A homozygous missense mutation of PUS1 was identified in Persian Jewish families affected by myopathy, lactic acidosis, and sideroblastic anemia. The amino acid change (Arg656Try) appears to be in the catalytic center of the protein PUS1p [46,47].

EFTu (elongation factor Tu) brings aminoacylated transfer RNAs to the ribosomal A site as a ternary complex with guanosine triphosphate. EFTs (elongation factor Ts) functions as a guanine nucleotide exchange factor for EFTu. The first mutation of EFTu was identified in a patient with a severe infantile macrocystic leukodystrophy with micropolygyria [48]. A homozygous mutation (C997T) of EFTs was found in patients with hypertrophic cardiomyopathy [49]. Antonicka et al. investigated the tissue specificity in patients with fatal hepatopathy due to EFG1 mutations. Liver was the most severely affected tissue, with <10% residual assembly of complexes I and IV and a 50% decrease in complex V. Skeletal muscle showed a 50% reduction in complex I, and complexes IV and V were 20% of the control. In fibroblasts, complexes I and IV were 20% of the control, and there was a 40–60% reduction in complexes III and V. In contrast, except for a 50% decrease in complex IV, all other complexes were nearly normal in the heart [50].


    Nuclear Modifier Genes Modulate the Phenotypic Expression of mtDNA Mutations
 Top
 Abstract
 Introduction
 Pathogenic Mutations of Nuclear...
 Pathogenic Mutations of Nuclear...
 Pathogenic Mutations of Nuclear...
 Nuclear Modifier Genes Modulate...
 Concluding Remarks
 Funding
 References
 
mtDNA mutations are responsible for a number of maternally inherited diseases, but not sufficient to account for the variable penetrance, implying that there must be some modifiers involved. These reasonable modifiers include mtDNA haplotype background, environmental factor, and nuclear modifier gene. The nuclear modifier does not induce any pathology per se, but it contributes to the pathogenic effect of the mitochondrial mutation. The nuclear modifier could be a common functional polymorphism in a tissue-specific protein, possibly with mitochondrial location [51].

In 1993, Prezant et al. [52] found that a homoplasmic mtDNA A1555G mutation for 12S rRNA was in a large Arab-Israeli pedigree with maternally inherited non-syndromic sensorineural deafness. Matrilineal inter-family and intra-family relatives carrying the A1555G mutation exhibited variable penetrance and expression, including severity and age-of-onset in hearing impairment, ranging from profound congenital deafness to severe and moderate progressive hearing loss of late onset or to completely normal hearing. Functional characterization demonstrated more-severe biochemical defects in the mutant lymphoblastoid cell lines derived from symptomatic individuals carrying the A1555G or C1494T mutation than from those of cell lines derived from asymptomatic individuals in the same family [53,54]. However, under a constant nuclear background, a nearly identical degree of mitochondrial dysfunction was observed in cybrid cell lines derived from symptomatic and asymptomatic individuals from this family [54,55]. These findings strongly indicated that the A1555G or C1494T mutation is a primary factor underlying the development of deafness, but it is insufficient to produce a clinical phenotype. Extensive genome-wide linkage studies of Arab-Israeli and European (Italian and Spanish) families revealed that the phenotypic expression of the A1555G mutation is, in fact, influenced by the complex inheritance of multiple nuclear-encoded modifier genes. Despite statistical support for the linkages of several putative modifier loci, including one locus localized to chromosome 8p23.1, no mutations in these modifier genes have been identified.

An interesting model for nuclear–mtDNA interaction for the phenotypic expression of the A1555G or C1494T mutation has been proposed. In the yeast Saccharomyces cerevisiae, the mutant alleles of MTO1, MSS1, or MTO2 that encodes mitochondrial proteins manifest a respiratory-deficient phenotype only when coupled with the paromomycin-resistance mitochondrial 15S rRNA C1409G mutation (PR454 or PR), corresponding to human deafness-associated 12S rRNA A1555G and C1494T mutations [5658]. These observations strongly indicated that Mss1p, Mto1p, or Mtop2 protein products affect the phenotypic expression of the C1409G mutation by functionally interacting with the region of the C1409G mutation in mitochondrial 15S rRNA. This modified nucleotide, found in the ‘wobble’ position of several bacterial tRNAs specific for glutamate, lysine, arginine, and glutamine, has a pivotal role in the structure and function of tRNAs, including structural stabilization, aminoacylation, and codon recognition at the decoding site of small ribosomal RNA.

Recently, we identified the nuclear modifier gene TRMU, which encodes a highly conserved 5-methylaminomethyl-2-thiouridylate-methyltransferase responsible for the biosynthesis of 5-taurinomethyl-2-thiouridine ({tau}m5s2U) of mt tRNALys, tRNAGlu, and tRNAGln in the wobble position. The {tau}m5s2U is further modified to mnm5s2U34 in the same position of those tRNAs in Escherichia coli and human mitochondria. This modified nucleotide contributes to the high fidelity of codon recognition and the structural formation and stabilization of functional tRNAs [59]. We demonstrated that isolated human TRMU cDNA partially restored the respiratory-deficient phenotype of yeast Mto2 cells carrying the C1409G mutation, and there was highly suggestive linkage and linkage disequilibrium between microsatellite markers adjacent to TRMU and the presence of deafness [45]. Genotyping analysis of TRMU in 613 subjects from one Arab-Israeli kindred, European (Italian and Spanish pedigrees) families, and 31 Chinese pedigrees carrying the A1555G or C1494T mutation revealed a missense mutation (G28T), altering an invariant amino acid residue (A10S) in the evolutionarily conserved N-terminal region of the TRMU protein. Interestingly, all 18 Arab-Israeli/Italian-Spanish matrilineal relatives carrying both the TRMU A10S and 12S rRNA A1555G mutations exhibited prelingual profound deafness. Functional analysis showed that this mutation did not affect importation of TRMU precursors into mitochondria. However, the homozygous A10S mutation leads to a marked failure in mitochondrial tRNA metabolisms, specifically reducing the steady-state levels of mitochondrial tRNA. As a consequence, these defects contribute to the impairment of mitochondrial protein synthesis. Resultant biochemical defects aggravate the mitochondrial dysfunction associated with the A1555G mutation, exceeding the threshold for expressing the deafness phenotype. These findings indicate that the mutated TRMU, acting as a modifier, modulates the phenotypic manifestation of the deafness-associated 12S rRNA mutations [60].

Indeed, the A1555G or C1494T mutation produces about 30 or 40% decrease in the rate of mitochondrial translation, respectively. The exposure to aminoglycosides yielded an additional 30% decrease in the rate of mitochondrial-protein synthesis in cells carrying the A1555G mutation. In fact, aminoglycosides are concentrated in the perilymph and endolymph of the inner ear, but are rapidly cleared in other tissues or organs [53,55]. Therefore, a 50–60% decrease in the rate of mitochondrial translation, caused by the combination of the A1555G mutation with aminoglycosides, leads to cell dysfunction or death of the auditory system, thereby inducing or worsening hearing loss. Here, a failure in tRNA metabolism, caused by the homozygous TRMU A10S mutation, accounted for a >20% decrease in the rate of mitochondrial-protein synthesis [60]. Indeed, about 50% decrease in the rate of mitochondrial translation observed in cells derived from symptomatic individuals V-1 and V-3 of the Arab-Israeli family was the consequence of a faulty interaction between unmodified tRNAs caused by the TRMU A 10S mutation and mitochondrial ribosomes carrying the 12S rRNA A1555G mutation [60]. Defects in the mitochondrial translation consequently led to a respiratory phenotype and a decline in ATP production below the threshold level required for normal cell function in the auditory organs, including cochlea, thus producing the deafness phenotype.


    Concluding Remarks
 Top
 Abstract
 Introduction
 Pathogenic Mutations of Nuclear...
 Pathogenic Mutations of Nuclear...
 Pathogenic Mutations of Nuclear...
 Nuclear Modifier Genes Modulate...
 Concluding Remarks
 Funding
 References
 
In conclusion, mitochondrial functions are under two separate genomes: the mitochondrial and the nuclear genomes. Mitochondrial disorders are complex and often poorly understood. In contrast to hundreds of mtDNA mutations, nuclear mutations have been found only in 19 genes encoding OXPHOS complex structural subunits. Identification of pathogenic mutations in complex assembly factors and translational machinery components will open a new field for mitochondrial disorders. Nuclear modifier genes play a role in the clinic expression of mtDNA mutations. Based on the correlation between genotype and phenotype, more attention should be paid to clarify the molecular pathogenic mechanisms of mitochondrial disorders in the future.


    Funding
 Top
 Abstract
 Introduction
 Pathogenic Mutations of Nuclear...
 Pathogenic Mutations of Nuclear...
 Pathogenic Mutations of Nuclear...
 Nuclear Modifier Genes Modulate...
 Concluding Remarks
 Funding
 References
 
This work was supported by the grants from the Program for New Century Excellent Talents in University (NCET-06-0526), Zhejiang Province 151 Excellent Talents Program (06-2-008), and the Program of Science and Technology in Zhejiang Province (2008C23028).


    References
 Top
 Abstract
 Introduction
 Pathogenic Mutations of Nuclear...
 Pathogenic Mutations of Nuclear...
 Pathogenic Mutations of Nuclear...
 Nuclear Modifier Genes Modulate...
 Concluding Remarks
 Funding
 References
 

  1. Schaefer AM, Taylor RW, Turnbull DM, Chinnery PF. The epidemiology of mitochondrial disorders—past, present and future. Biochim Biophys Acta (2004) 1659:115–120.[Medline]
  2. Luft R, Ikkos D, Palmieri G, Ernster L, Afzelius B. A case of severe hypermetabolism of nonthyroid origin with a defect in the maintenance of mitochondrial respiratory control: a correlated clinical, biochemical, and morphological study. J Clin Invest (1962) 41:1776–1804.[Web of Science][Medline]
  3. Holt IJ, Harding AE, Morgan-Hughes JA. Deletions of muscle mitochondrial DNA in patients with mitochondrial myopathies. Nature (1988) 331:717–719.[CrossRef][Medline]
  4. Wallace DC, Singh G, Lott MT, Hodge JA, Schurr TG, Lezza AM, Elsas LJ, Nikoskelainen EK. Mitochondrial DNA mutation associated with Leber's hereditary optic neuropathy. Science (1988) 242:1427–1430.[Abstract/Free Full Text]
  5. Bourgeron T, Rustin P, Chretien D, Birch-Machin M, Bourgeois M, Viegas-Péquignot E, Munnich A, Rotig A. Mutation of a nuclear succinate dehydrogenase gene results in mitochondrial respiratory chain deficiency. Nat Genet (1995) 11:144–149.[CrossRef][Web of Science][Medline]
  6. Yan QF, Guan MX. Nuclear genes and mitochondrial genes associated with mitochondrial diseases. Chin Bull Life Sci (2008) 20.
  7. De Meirleir L, Seneca S, Lissens W, De Clercq I, Eyskens F, Gerlo E, Smet J, Van Coster R, Lazarou M, Thorburn DR, Ryan MT, McKenzie M. Respiratory chain complex V deficiency due to a mutation in the assembly gene ATP12. J Med Genet (2004) 41:120–124.[Abstract/Free Full Text]
  8. Lazarou M, Thorburn DR, Ryan MT, McKenzie M. Assembly of mitochondrial complex I and defects in disease. Biochim Biophys Acta (2009) 1793:78–88.
  9. Janssen RJ, Nijtmans LG, van den Heuvel LP, Smeitink JA. Mitochondrial complex I: structure, function and pathology. J Inherit Metab Dis (2006) 929:499–515.
  10. Benit P, Chretien D, Kadhom N, de Lonlay-Debeney P, Cormier-Daire V, Cabral A, Peudenier S, Rustin P, Munnich A, Rotig A. Large-scale deletion and point mutations of the nuclear NDUFV1 and NDUFS1 genes in mitochondrial complex I deficiency. Am J Hum Genet (2001) 68:1344–1352.[CrossRef][Web of Science][Medline]
  11. Loeffen J, Elpeleg O, Smeitink J, Smeets R, Stockler-Ipsiroglu S, Mandel H, Sengers R, Trijbels F, Van Den Heuvel L. Mutations in the complex I NDUFS2 gene of patients with cardiomyopathy and encephalomyopathy. Ann Neurol (2001) 49:195–201.[CrossRef][Web of Science][Medline]
  12. Benit P, Slama A, Cartault F, Giurgea I, Chretien D, Lebon S, Marsac C, Munnich A, Rotig A, Rustin P. Mutant NDUFS3 subunit of mitochondrial complex I causes Leigh syndrome. J Med Genet (2004) 41:14–17.[Abstract/Free Full Text]
  13. van den Heuvel L, Ruitenbeek W, Smeets R, Gelman-Kohan Z, Elpeleg O, Loeffen J, Trijbels F, Mariman E, de Bruijn D, Smeitink J. Demonstration of a new pathogenic mutation in human complex I deficiency: a 5-bp duplication in the nuclear gene encoding the 18-kD (AQDQ) subunit. Am J Hum Genet (1998) 62:262–268.[CrossRef][Web of Science][Medline]
  14. Kirby DM, Salemi R, Sugiana C, Ohtake A, Parry L, Bell KM, Kirk EP, Boneh A, Taylor RW, Dahl Hans-Henrik M, Ryan MT, Thorburn DR. NDUFS6 mutations are a novel cause of lethal neonatal mitochondrial complex I deficiency. J Clin Invest (2004) 114:837–845.[CrossRef][Web of Science][Medline]
  15. Smeitink J, van den Heuvel L. Protein Biosynthesis ‘99. Human mitochondrial complex I in health and disease. Am J Hum Genet (1999) 64:1505–1510.[CrossRef][Web of Science][Medline]
  16. Loeffen J, Smeitink J, Triepels R, Smeets R, Schuelke M, Sengers R, Trijbels F, Hamel B, Mullaart R, van den Heuvel L. The first nuclear-encoded complex I mutation in a patient with Leigh Syndrome. Am J Hum Genet (1998) 63:1598–1608.[CrossRef][Web of Science][Medline]
  17. Procaccio V, Wallace DC. Late-onset Leigh syndrome in a patient with mitochondrial complex I NDUFS8 mutations. Neurology (2004) 62:1899–1901.[Abstract/Free Full Text]
  18. Benit P, Beugnot R, Chretien D, Giurgea I, De Lonlay-Debeney P, Issartel JP, Corral-Debrinski M, Kerscher S, Rustin P, Rotig A, Munnich A. Mutant NDUFV2 subunit of mitochondrial complex I causes early onset hypertrophic cardiomyopathy and encephalopathy. Hum Mut (2003) 21:582–586.[CrossRef][Web of Science][Medline]
  19. Fernandez-Moreira D, Ugalde C, Smeets R, Rodenburg RJ, Lopez-Laso E, Ruiz-Falco ML, Briones P, Martin MA, Smeitink JA, Arenas J. X-linked NDUFA1 gene mutations associated with mitochondrial encephalomyopathy. Ann Neurol (2007) 61:73–83.[CrossRef][Web of Science][Medline]
  20. Hoefs SJ, Dieteren CE, Distelmaier F, Janssen RJ, Epplen A, Swarts HG, Forkink M, Rodenburg RJ, Nijtmans LG, Willems PH, Smeitink JA, van den Heuvel LP. NDUFA2 complex I mutation leads to Leigh disease. Am J Hum Genet (2008) 82:1306–1315.[CrossRef][Web of Science][Medline]
  21. Berger I, Hershkovitz E, Shaag A, Edvardson S, Saada A, Elpeleg O. Mitochondrial complex I deficiency caused by a deleterious NDUFA11 mutation. Ann Neurol (2008) 63:405–408.[CrossRef][Web of Science][Medline]
  22. Astuti D, Latif F, Dallol A, Dahia PLM, Douglas F, George E, Skoldberg F, Husebye ES, Eng C, Maher ER. Gene mutations in the succinate dehydrogenase subunit SDHB cause susceptibility to familial pheochromocytoma and to familial paraganglioma. Am J Hum Genet (2001) 69:49–54.[CrossRef][Web of Science][Medline]
  23. Niemann S, Muller U. Mutations in SDHC cause autosomal dominant paraganglioma, type 3. Nat Genet (2000) 26:268–270.[CrossRef][Web of Science][Medline]
  24. Baysal BE, Ferrell RE, Willett-Brozick JE, Lawrence EC, Myssiorek D, Bosch A, van der Mey A, Taschner PEM, Rubinstein WS, Myers EN, Richard CW, et al. Mutations in SDHD, a mitochondrial complex II gene, in hereditary paraganglioma. Science (2000) 287:848–851.[Abstract/Free Full Text]
  25. Haut S, Brivet M, Touati G, Rustin P, Lebon S, Garcia-Cazorla A, Saudubray JM, Boutron A, Legrand A, Slama A. A deletion in the human QP-C gene causes a complex III deficiency resulting in hypoglycaemia and lactic acidosis. Hum Genet (2003) 113:118–122.[CrossRef][Web of Science][Medline]
  26. Barel O, Shorer Z, Flusser H, Ofir R, Narkis G, Finer G, Shalev H, Nasasra A, Saada A, Birk OS. Mitochondrial complex III deficiency associated with a homozygous mutation in UQCRQ. Am J Hum Genet (2008) 82:1211–1216.[CrossRef][Web of Science][Medline]
  27. Massa V, Fernandez-Vizarra E, Alshahwan S, Bakhsh E, Goffrini P, Ferrero I, Mereghetti P, D'Adamo P, Gasparini P, Zeviani M. Severe infantile encephalomyopathy caused by a mutation in COX6B1, a nucleus-encoded subunit of cytochrome c oxidase. Am J Hum Genet (2008) 82:1281–1289.[CrossRef][Web of Science][Medline]
  28. Ogilvie I, Kennaway NG, Shoubridge EA. A molecular chaperone for mitochondrial complex I assembly is mutated in a progressive encephalopathy. J Clin Invest (2005) 115:2784–2792.[CrossRef][Web of Science][Medline]
  29. Dunning CJ, McKenzie M, Sugiana C, Lazarou M, Silke J, Connelly A, Fletcher JM, Kirby DM, Thorburn DR, Ryan MT. Human CIA30 is involved in the early assembly of mitochondrial complex I and mutations in its gene cause disease. EMBO J (2007) 26:3227–3237.[CrossRef][Web of Science][Medline]
  30. Saada A, Edvardson S, Rapoport M, Shaag A, Amry K, Miller C, Lorberboum-Galski H, Elpeleg O. C6ORF66 is an assembly factor of mitochondrial complex I. Am J Hum Genet (2008) 82:32–38.[CrossRef][Web of Science][Medline]
  31. Sugiana C, Pagliarini DJ, McKenzie M, Kirby DM, Salemi R, Abu-Amero KK, Dahl HH, Hutchison WM, Vascotto KA, Smith SM, Newbold RF, Christodoulou J, Calvo S, Mootha VK, Ryan MT, Thorburn DR. Mutation of C20orf7 disrupts complex I assembly and causes lethal neonatal mitochondrial disease. Am J Hum Genet (2008) 83:468–478.[CrossRef][Web of Science][Medline]
  32. de Lonlay P, Valnot I, Barrientos A, Gorbatyuk M, Tzagoloff A, Taanman JW, Benayoun E, Chrétien D, Kadhom N, Lombès A, de Baulny HO, Niaudet P, Munnich A, Rustin P, Rotig A. A mutant mitochondrial respiratory chain assembly protein causes complex III deficiency in patients with tubulopathy, encephalopathy and liver failure. Nat Genet (2001) 29:57–60.[CrossRef][Web of Science][Medline]
  33. Visapaa I, Fellman V, Vesa J, Dasvarma A, Hutton JL, Kumar V, Payne GS, Makarow M, Coster RV, Taylor RW, Turnbull DM, Suomalainen A, Peltonen L. GRACILE syndrome, a lethal metabolic disorder with iron overload, is caused by a point mutation in BCS1L. Am J Hum Genet (2002) 71:863–876.[CrossRef][Web of Science][Medline]
  34. Tiranti V, Hoertnagel K, Carrozzo R, Galimberti C, Munaro M, Granatiero M, Zelante L, Gasparini P, Marzella R, Rocchi M, Bayona-Bafaluy MP, Enriquez JA, Uziel G, Bertini E, Dionisi-Vici C, Franco B, Meitinger T, Zeviani M. Mutations of SURF-1 in Leigh disease associated with cytochrome c oxidase deficiency. Am J Hum Genet (1998) 63:1609–1621.[CrossRef][Web of Science][Medline]
  35. Zhu Z, Yao J, Johns T, Fu K, De Bie I, Macmillan C, Cuthbert AP, Newbold RF, Wang JC, Chevrette M, Brown GK, Brown RM, Shoubridge EA. SURF1, encoding a factor involved in the biogenesis of cytochrome c oxidase, is mutated in Leigh syndrome. Nat Genet (1998) 20:337–343.[CrossRef][Web of Science][Medline]
  36. Valnot I, Osmond S, Gigarel N, Mehayea B, Amiela J, Cormier-Dairea V, Munnicha A, Bonnefonta JP, Rustina P, Rotig A. Mutations of the SCO1 gene in mitochondrial cytochrome c oxidase deficiency with neonatal-onset hepatic failure and encephalopathy. Am J Hum Genet (2000) 67:1104–1109.[Web of Science][Medline]
  37. Papadopoulou LC, Sue CM, Davidson MM, Tanji K, Nishino I, Sadlock JE, Krishna S, Walker W, Selby J, Glerum DM, Coster RV, Lyon G, Scalais E, Lebel R, Kaplan P, Shanske S, De Vivo DC, Bonilla E, Hirano M, DiMauro S, Schon EA. Fatal infantile cardioencephalomyopathy with COX deficiency and mutations in SCO2, a COX assembly gene. Nat Genet (1999) 23:333–337.[CrossRef][Web of Science][Medline]
  38. Antonicka H, Leary SC, Guercin GH, Agar JN, Horvath R, Kennaway NG, Harding CO, Jaksch M, Shoubridge EA. Mutations in COX10 result in a defect in mitochondrial heme A biosynthesis and account for multiple, early-onset clinical phenotypes associated with isolated COX deficiency. Hum Mol Genet (2003) 12:2693–2702.[Abstract/Free Full Text]
  39. Antonicka H, Mattman A, Carlson CG, Glerum DM, Hoffbuhr KC, Leary SC, Kennaway NG, Shoubridge EA. Mutations in COX15 produce a defect in the mitochondrial heme biosynthetic pathway, causing early-onset fatal hypertrophic cardiomyopathy. Am J Hum Genet (2003) 72:101–114.[CrossRef][Web of Science][Medline]
  40. Oquendo CE, Antonicka H, Shoubridge EA, Reardon W, Brown GK. Functional and genetic studies demonstrate that mutation in the COX15 gene can cause Leigh syndrome. J Med Genet (2004) 41:540–544.[Free Full Text]
  41. Mootha VK, Lepage P, Miller K, Bunkenborg J, Reich M, Hjerrild M, Delmonte T, Villeneuve A, Sladek R, Xu FH, Mitchell GA, Morin C, Mann M, Hudson TJ, Robinson B, Rioux JD, Lander ES. Identification of a gene causing human cytochrome c oxidase deficiency by integrative genomics. Proc Natl Acad Sci USA (2003) 100:605–610.[Abstract/Free Full Text]
  42. Jacobs HT, Turnbull DM. Nuclear genes and mitochondrial translation: a new class of genetic disease. Trends Genet (2005) 21:312–314.[CrossRef][Web of Science][Medline]
  43. Coenen MJH, Antonicka H, Ugalde C, Sasarman F, Rossi R, Heister A, Newbold RF, Trijbels F, van den Heuvel LP, Shoubridge EA, Smeitink JAM. Mutant mitochondrial elongation factor G1 and combined oxidative phosphorylation deficiency. N Engl J Med (2004) 351:2080–2086.[Abstract/Free Full Text]
  44. Miller C, Saada A, Shaul N, Shabtai N, Ben-Shalom E, Shaag A, Hershkovitz E, Elpeleg O. Defective mitochondrial translation caused by a ribosomal protein (MRPS16) mutation. Am Neurol (2004) 56:734–738.[CrossRef]
  45. Saada A, Shaag A, Arnon S, Dolfin T, Miller C, Fuchs-Telem D, Lombes A, Elpeleg O. Antenatal mitochondrial disease caused by mitochondrial ribosomal protein (MRPS22) mutation. J Med Genet (2007) 44:784–786.[Abstract/Free Full Text]
  46. Bykhovskaya Y, Casas K, Mengesha E, Inbal A, Fischel-Ghodsian N. Missense mutation in pseudouridine synthase 1 (PUS1) causes mitochondrial myopathy and sideroblastic anemia (MLASA). Am J Hum Genet (2004) 74:1303–1308.[CrossRef][Web of Science][Medline]
  47. Zeharia A, Fischel-Ghodsian N, Casas K, Bykhovskaya Y, Tamari H, Lev D, Mimouni M, Lerman-Sagie T. Mitochondrial myopathy, sideroblastic anemia, and lactic acidosis: an autosomal recessive syndrome in Persian Jews caused by a mutation in the PUS1 gene. J Child Neurol (2005) 20:449–452.[Abstract/Free Full Text]
  48. Antonicka H, Sasarman F, Kennaway NG, Shoubridge EA. The molecular basis for tissue specificity of the oxidative phosphorylation deficiencies in patients with mutations in the mitochondrial translation factor EFG1. Hum Mol Genet (2006) 15:1835–1846.[Abstract/Free Full Text]
  49. Valente L, Tiranti V, Marsano RM, Malfattie E, Fernandez-Vizarra E, Donninid C, Mereghettib P, Gioiab LD, Burlinaf A, Castellang C, Comic GP, Savastah S, Ferrerod I, Zeviani M. Infantile encephalopathy and defective mitochondrial DNA translation in patients with mutations of mitochondrial elongation factors EFG1 and EFTu. Am J Hum Genet (2007) 80:44–58.[CrossRef][Web of Science][Medline]
  50. Smeitink JAM, Elpeleg O, Antonicka H, Diepstraa H, Saada A, Smitsa P, Sasarmanc F, Vriendb G, Jacob-Hirsch J, Shaag A, Rechavi G, Wellinge B, Horste J, Rodenburga RJ, van den Heuvela B, Shoubridgec EA. Distinct clinical phenotypes associated with a mutation in the mitochondrial translation elongation factor EFTs. Am J Hum Genet (2006) 79:869–877.[CrossRef][Web of Science][Medline]
  51. Carelli V, Giordano C, d'Amati G. Pathogenic expression of homoplasmic mtDNA mutations needs a complex nuclear–mitochondrial interaction. Trends Genet (2003) 19:257–262.[CrossRef][Web of Science][Medline]
  52. Prezant TR, Agapian JV, Bohlman MC, Bu XD, Oztas S, Qiu WQ, Arnos KS, Cortopassi GA, Jaber L, Rotter JI, Shohat M, Fischel-Ghodsian N. Mitochondrial ribosomal RNA mutation associated with both antibiotic-induced and non-syndromic deafness. Nat Genet (1993) 4:289–294.[CrossRef][Web of Science][Medline]
  53. Guan MX, Fischel-Ghodsian N, Attardi G. Biochemical evidence for nuclear gene involvement in phenotype of non-syndromic deafness associated with mitochondrial 12S rRNA mutation. Hum Mol Genet (1996) 6:963–972.[Web of Science]
  54. Zhao H, Li R, Wang Q, Yan QF, Deng JH, Han DY, Bai YD, Young WY, Guan MX. Maternally inherited aminoglycoside-induced and nonsyndromic deafness is associated with the novel C1494T mutation in the mitochondrial 12S rRNA gene in a large Chinese family. Am J Hum Genet (2004) 74:139–152.[CrossRef][Web of Science][Medline]
  55. Guan MX. Molecular pathogenetic mechanism of maternally inherited deafness. Ann NY Acad Sci (2004) 1011:259–271.[CrossRef][Web of Science][Medline]
  56. Yan QF, Li X, Faye G, Guan MX. Mutations in the MTO2 related to tRNA modification impair mitochondrial gene expression and protein synthesis in the presence of a paromomycin-resistance mutation in mitochondrial 15S rRNA. J Biol Chem (2005) 280:29151–29157.[Abstract/Free Full Text]
  57. Colby G, Wu M, Tzagolof A. MTO1 codes for a mitochondrial protein required for respiration in paromomycin-resistant mutants of Saccharomyces cerevisiae. J Biol Chem (1998) 273:27945–27952.[Abstract/Free Full Text]
  58. Decoster E, Vassal A, Faye G. MSS1, a nuclear-encoded mitochondrial GTPase involved in the expression of COX1 subunit of cytochrome c oxidase. J Mol Biol (1993) 232:79–88.[CrossRef][Web of Science][Medline]
  59. Yan QF, Bykhovskaya Y, Li R, Mengeshab E, Shohatc M, Estivilld X, Fischel-Ghodsianb N, Guan MX. Human TRMU encoding the mitochondrial 5-methylaminomethyl-2-thiouridylate-methyltransferase is a putative nuclear modifier gene factor for the phenotypic expression of the deafness-associated 12 S rRNA mutations. Biochem Biophys Res Commun (2006) 342:1130–1136.[CrossRef][Web of Science][Medline]
  60. Guan MX, Yan Q, Li X, Bykhovskayac Y, Gallo-Terand J, Hajeke P, Umedaf N, Zhao H, Garridod G, Mengeshac E, Suzukif T, del Castillod I, Petersa JL, Lia R, Qiana Y, Wanga X, Ballanag E, Shohath M, Lui J, Estivillg X, Watanabef K, Fischel-Ghodsian N. Mutation in TRMU related to mitochondrial tRNA modification modulates the phenotypic expression of the deafness-associated mitochondrial 12S rRNA mutations. Am J Hum Genet (2006) 79:291–302.[CrossRef][Web of Science][Medline]

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